Function build_system_prompt_with_mode_and_autonomy 

pub fn build_system_prompt_with_mode_and_autonomy(
    workspace_dir: &Path,
    model_name: &str,
    tools: &[(&str, &str)],
    skills: &[Skill],
    identity_config: Option<&IdentityConfig>,
    bootstrap_max_chars: Option<usize>,
    autonomy_config: Option<&RiskProfileConfig>,
    native_tool_specs_present: bool,
    skills_prompt_mode: SkillsPromptInjectionMode,
    compact_context: bool,
    max_system_prompt_chars: usize,
    inject_memory: bool,
    show_tool_calls: bool,
) -> String